Pediatric Hub

Genetic Disorders & DSD

Down Syndrome, Turner, Klinefelter, Fragile X, Marfan, NF1 & Prader-Willi

Genetic Disorders & Differences of Sex Development

Differences of sex development (DSD) are congenital conditions in which chromosomal, gonadal, or anatomic sex is atypical. Categories include sex chromosome DSDs (e.g., Klinefelter syndrome 47,XXY; Turner syndrome 45,X), 46,XY DSD (e.g., androgen insensitivity, 5-alpha-reductase deficiency), and 46,XX DSD (e.g., congenital adrenal hyperplasia).

Inheritance Patterns — Quick Reference

PatternMechanismExampleKey Board Fact
ChromosomalExtra or missing chromosome; nondisjunctionDown (Trisomy 21), Turner (XO), Klinefelter (XXY)Risk increases with maternal age (Trisomy 21). Turner/Klinefelter — sex chromosome anomalies.
Autosomal DominantOne mutated allele sufficient; 50% transmissionMarfan syndrome, Neurofibromatosis type 1, AchondroplasiaAffected parent = 50% risk each pregnancy. Variable expressivity common.
Autosomal RecessiveTwo mutated alleles required; 25% risk if both carriersCF, PKU, Tay-Sachs, sickle cellParents often unaffected carriers. Consanguinity increases risk.
X-Linked RecessiveGene on X chromosome; males affected, females carriersFragile X, Duchenne MD, hemophiliaNo male-to-male transmission. Carrier females may be mildly affected (Fragile X).
Non-Mendelian (Imprinting)Expression depends on which parent transmits allelePrader-Willi (paternal 15q11 deleted), Angelman (maternal 15q11 deleted)Same chromosomal region - different syndrome depending on parent of origin.

Klinefelter Syndrome (47,XXY)

  • Most common sex chromosome aneuploidy in males (~1 in 500-1,000 live male births)
  • Etiology: meiotic nondisjunction producing an extra X chromosome
  • Clinical: tall stature, long extremities, small firm testes, gynecomastia, sparse body/facial hair, infertility (azoospermia), low testosterone with elevated LH/FSH (hypergonadotropic hypogonadism), learning/behavioral difficulties
  • Diagnosis: karyotype (47,XXY); hormonal panel (decreased testosterone, elevated LH, FSH, estradiol)
  • Management: testosterone replacement starting in adolescence; fertility counseling (sperm extraction/ICSI may be possible); treat gynecomastia, osteoporosis risk, metabolic syndrome; multidisciplinary support
Boards PearlKlinefelter = tall, infertile male with small testes, gynecomastia, and elevated gonadotropins. Increased risk of breast cancer (compared to other males), osteoporosis, metabolic syndrome, and mediastinal germ cell tumors.

Reference: AMBOSS — Differences (disorders) of sex development

Down Syndrome (Trisomy 21)

  • Most common autosomal aneuploidy and leading genetic cause of intellectual disability (~1 in 700 live births); incidence increases with advanced maternal age
  • Etiology: meiotic nondisjunction (~95%), Robertsonian translocation (~4%), or mosaicism (~1%)
  • Clinical: intellectual disability, characteristic facies (upslanting palpebral fissures, epicanthal folds, flat nasal bridge, small ears), single transverse palmar crease, hypotonia, short stature, brachycephaly
  • Associated conditions: congenital heart defects (endocardial cushion/AV septal defect most characteristic), duodenal atresia, Hirschsprung disease, hypothyroidism, atlantoaxial instability, early-onset Alzheimer disease, increased risk of ALL/AML
  • Prenatal screening: first-trimester combined (nuchal translucency, PAPP-A, beta-hCG); cell-free fetal DNA (cfDNA); quad screen (elevated hCG, elevated inhibin A, decreased AFP, decreased estriol); confirmatory: CVS or amniocentesis (karyotype)
  • Management: multidisciplinary — early intervention, routine screening for cardiac, thyroid, hearing/vision, cervical spine, and hematologic issues
Boards PearlQuad screen in Down syndrome: elevated hCG and inhibin A, decreased AFP and estriol. Endocardial cushion defect is the classic cardiac lesion. "Double bubble" sign on imaging = duodenal atresia.

Reference: AMBOSS — Down syndrome

Fragile X Syndrome

  • Most common inherited cause of intellectual disability; second most common genetic cause overall (after Down syndrome)
  • Etiology: X-linked; CGG trinucleotide repeat expansion in the FMR1 gene leading to hypermethylation and silencing of FMRP. Full mutation: over 200 repeats; premutation: 55-200 repeats
  • Clinical (males more severely affected): intellectual disability, long narrow face, large protruding ears, prominent jaw, macroorchidism (post-puberty), hyperextensible joints, mitral valve prolapse; behavioral — autism spectrum features, ADHD, anxiety
  • Premutation carriers: fragile X-associated tremor/ataxia syndrome (FXTAS) in older males; primary ovarian insufficiency (FXPOI) in females
  • Diagnosis: molecular testing for CGG repeat number and methylation status of FMR1
  • Management: supportive — behavioral/educational interventions, speech and occupational therapy, treatment of comorbid ADHD, anxiety, seizures
Boards PearlFragile X = trinucleotide repeat (CGG) with anticipation. Classic triad in males: long face + large ears + macroorchidism. Think Fragile X in boys with autism + intellectual disability.

Reference: AMBOSS — Fragile X syndrome

Turner Syndrome (45,X)

  • Monosomy X (or partial loss/mosaicism) in a phenotypic female; ~1 in 2,500 live female births
  • Clinical: short stature (most common feature), webbed neck, low posterior hairline, shield chest with widely spaced nipples, cubitus valgus, lymphedema of hands/feet in infancy, streak ovaries leading to primary amenorrhea and infertility, delayed/absent puberty
  • Associated conditions: bicuspid aortic valve and coarctation of the aorta (cardiac screening essential), horseshoe kidney, autoimmune thyroiditis, osteoporosis, hearing loss
  • Diagnosis: karyotype (45,X or mosaic 45,X/46,XX); elevated FSH/LH with decreased estrogen (hypergonadotropic hypogonadism)
  • Management: growth hormone therapy in childhood; estrogen replacement at pubertal age for secondary sexual development and bone health; cardiac imaging (echo/MRI); monitor for thyroid, renal, and hearing issues
Boards PearlTurner syndrome: short female + primary amenorrhea + webbed neck. Always screen for bicuspid aortic valve and coarctation of the aorta. Streak gonads carry risk of gonadoblastoma if Y-chromosome material present.

Reference: AMBOSS — Turner syndrome

Marfan Syndrome

  • Autosomal dominant — FBN1 gene mutation (fibrillin-1 protein), chromosome 15; ~25% de novo mutations
  • Clinical: tall stature, long limbs, arachnodactyly, pectus excavatum/carinatum, scoliosis, high arched palate, ectopia lentis (upward lens dislocation), aortic root dilation leading to dissection/rupture (most life-threatening feature), MVP, spontaneous pneumothorax
  • Diagnosis: Ghent nosology criteria (major + minor criteria across systems); echocardiogram at diagnosis
  • Management: beta-blockers (atenolol) or losartan to slow aortic dilation; annual echo; ophthalmology; avoid contact sports; genetic counseling; prophylactic aortic root replacement when indicated
Boards PearlMarfan vs. Homocystinuria — both have tall stature + arachnodactyly + lens dislocation. Key difference: Marfan = lens UP, normal IQ. Homocystinuria = lens DOWN, intellectual disability, thromboembolism risk.

Neurofibromatosis Type 1 (NF1)

  • Autosomal dominant — NF1 gene (neurofibromin tumor suppressor), chromosome 17; ~50% de novo mutations; most common single-gene disorder (1:3,000)
  • Diagnosis requires 2 of 7 criteria: 6 or more cafe-au-lait macules (over 5mm prepubertal / over 15mm postpubertal), 2 or more neurofibromas or 1 plexiform neurofibroma, axillary/inguinal freckling (Crowe sign), optic glioma, Lisch nodules (iris hamartomas — pathognomonic), sphenoid dysplasia or tibial pseudarthrosis, first-degree relative with NF1
  • Complications: learning disabilities (~50% — most common complication), ADHD, scoliosis, short stature, plexiform neurofibromas leading to MPNST, optic pathway glioma, increased risk of leukemia (JMML), hypertension (renal artery stenosis or pheochromocytoma)
  • Management: annual neurological exam, BP, ophthalmology, developmental assessment; MEK inhibitor (selumetinib) FDA-approved for plexiform neurofibromas in children
Boards PearlCafe-au-lait spots + axillary freckling = NF1 until proven otherwise. Lisch nodules are pathognomonic but require slit-lamp exam. Most common complication = learning disabilities, not tumors.

Prader-Willi Syndrome

  • Paternal deletion of 15q11-q13 (70%), maternal uniparental disomy (25%), or imprinting defect; contrast with Angelman syndrome (maternal 15q11 deletion)
  • Biphasic presentation: Phase 1 (infancy) — profound hypotonia, poor suck, feeding difficulties, undescended testes, almond-shaped eyes; Phase 2 (toddler/childhood) — hyperphagia, rapid obesity, short stature, mild-moderate intellectual disability, behavioral issues (temper tantrums, OCD features, skin-picking)
  • Associated: obesity leading to T2DM, sleep apnea, scoliosis; GH deficiency; hypogonadism; hypothyroidism; high pain threshold
  • Diagnosis: methylation analysis (detects all 3 mechanisms)
  • Management: growth hormone therapy (start early, even in infancy); strict dietary and caloric control with supervised food access; early intervention PT/OT/speech; behavioral management; sleep study for OSA
Boards PearlPrader-Willi = paternal 15q11 deletion → hypotonia (infancy) → hyperphagia + obesity (childhood). Angelman = maternal 15q11 deletion → "happy puppet" — severe ID, absent speech, seizures, ataxia. Same chromosome region, opposite parent = opposite syndrome.

Master Comparison — Genetic Syndromes

SyndromeGeneticsClassic FeatureMost Common CHDBoard Trap
Down (Trisomy 21)47,+21; nondisjunction (95%)Hypotonia, flat facies, upslanting fissures, single palmar creaseAVSD (AV canal)Translocation = check parents karyotype
Turner (45,X)Monosomy XShort stature, webbed neck, primary amenorrhea, streak gonadsCoarctation of aortaNOT associated with advanced maternal age
Klinefelter (XXY)47,XXY; extra XTall, small firm testes, gynecomastia, azoospermiaMVPMost undiagnosed until infertility workup
MarfanAD; FBN1; chr 15Tall, arachnodactyly, ectopia lentis (upward), aortic root dilationAortic root dilation / MVPLens UP in Marfan; DOWN in homocystinuria
NF1AD; NF1; chr 176+ cafe-au-lait spots, axillary freckling, Lisch nodulesPulmonary/renal artery stenosisLearning disabilities = most common complication
Fragile XX-linked; FMR1; CGG over 200ID, autism features, macroorchidism, prominent earsMVPMost common INHERITED ID; most common genetic cause of autism
Prader-WilliPaternal 15q11 deletionHypotonia (infancy) then hyperphagia + obesity (childhood)None specificAngelman = maternal 15q11 = happy, seizures, no speech